Hello,
Sorry to hear you are having issues. It is best to move all icons into a Fence so Fences can manage it. What you can do, is setup a new Fence and set Fences rule for it to have all new icons/shortcut to move into that Fences. You can than move those new icons into which ever Fences you like. To setup rules refer to screenshot below. In this example I created a new Fences named "New Temp". Than I open up Fences 4 configuration Windows->Sorting & organizing-> set all new icons go to "New Temp"

Thanks
Basj,
Stardock Community Assistant.