I'm not getting these issues when I try to re-create it.
What version of Windows are you using, including 32bit or 64bit
Is it ObjectDock (free version) or ObjectDock Plus (paid version) and what version is it showing
Did you download the software directly from Stardock or somewhere else
the bottom of the program is raised above the dock, with the background showing.
I think you mean the program window is just shifted up too high so that only a strip of the dock is showing right? As opposed to the window actually stopping completely above the dock - that's a setting you can choose.
Are you having the problems with any particular applications or pretty much anything. I'm also wondering how often the problems show up - maybe a person would have to leave the arrangement going longer than I did to see it.