Keikonuim,
Have you done the following?
1 - Boot to set-up (BIOS/CMOS settings) screen
2 - Verify that the new drive is recognized on IDE (1) as secondary slave device (note - this assumes that you have the first device on the secondary adapter set as 'Master'. If you have the first device set for "Cable Select", you will need to set the new drive to "Cable Select" as well - assuming an 80 wire ribbon cable - due to the fact that if one device is set to "Cable Select", all devices will run at "Cable Select").
Edit - you can also set the original drive to "Master", and then the new drive to "Slave".
3 - Verify that both "Auto-Detect" and "UDMA" are enabled
4 - Boot to Windows
5 - Go to Administative Tools\Computer Management\Disk Management and delete the current partition on the new drive
6 - Create a new "Basic" logical partition, and then format the new partition (NTFS recommended).
7 - Reboot machine to verify all is well
Note - this would be the standard procedure for installing a new drive that has low level pre-formatting (which this drive probably does). Once the drive is formatted by the operating system, it should be loaded and recognized without issue.
Note #2- you will obviously need to backup any content currently on the drive that you want to save before deleting the current partition.